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-[[:prado:start|{{:brasil-icon.png?30|Português  }}]]+
  
 ====== Paulo Inácio Prado ====== ====== Paulo Inácio Prado ======
  
-{{:prado:paulo_2010.jpg?200  }}+{{:prado:gpi.jpg  }}
  
 I am a biologist, PhD in Ecology and teacher at the [[http://ecologia.ib.usp.br/|Ecology Department]] from the [[http://www.ib.usp.br/|Instituto de Biociências]] of [[www.usp.br|Universidade de São Paulo]].  I am a biologist, PhD in Ecology and teacher at the [[http://ecologia.ib.usp.br/|Ecology Department]] from the [[http://www.ib.usp.br/|Instituto de Biociências]] of [[www.usp.br|Universidade de São Paulo]]. 
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 \\ \\
  
-===== Research ===== +  * CV in the [[http://lattes.cnpq.br/3884092565521453|Lattes Database]] kept by the Brazilian Research Council ( [[http://www.cnpq.br|CNPq]] ),  
-====Imperfect detection - Does it matter? ====+  *  [[http://scholar.google.com/citations?user=Q8PN0rAAAAAJ&hl=en|Google Scholar]].
  
-=== Goal === 
-To 
-evaluate the sensitivity of the results and conclusions of selected case studies to the 
-inclusion of imperfect detection. 
  
-=== Background === +===== Research =====
-The advancement and application of ecological theory depends on +
-unbiased and precise estimates of occurrence, size and vital rates of +
-populations in ecological systems. There is a growing concern that +
-such estimates are strongly affected by observation bias; the most +
-obvious case are false absences. A +
-formalism of hierarchical statistical models to tackle the problem is +
-now available. Colletively known  as hierarchical models with imperfect +
-detection, such statistical methods could be applied much more widely +
-than they currently are. Nevertheless, this new approach involves +
-complex statistical procedures and larger sampling efforts. Thus, it +
-is necessary to evaluate the effective gains of the models with +
-imperfect detection in different types of ecological research.  +
- +
- +
-==== Species Abundance Distributions ==== +
- +
-Because I seek first principles, one of my research interests is perhaps the only general law in Community Ecology: the predominance of rare species. +
- +
-My main research project is to develop an analytical protocol to describe this pattern. The research was funded by [[www.fapesp.br|FAPESP]] and [[www.cnpq.br|CNPq]], and you can find more information [[projetos:sad|here]].  +
- +
-Many of my students also do their research on this topic, see the page of [[atividades:pesquisa|research projects]]. +
- +
-=== Representative Publications === +
- +
-<bibtex> +
-@ARTICLE{Prado2009, +
-  author = {Prado, P I}, +
-  title = {Distribuições de Abundâncias de Espécies: avanços analíticos para entender um padrão básico em ecologia}, +
-  journal = {Ciência e Ambiente}, +
-  year = {2009}, +
-  volume = {39}, +
-  pages = {121 -- 136}, +
-  file={:prado:prado2009_ca.pdf} +
-} +
- +
-@Manual{, +
-    title = {{sads}: Maximum Likelihood Models for Species Abundance Distributions}, +
-    author = {Paulo I. Prado and Murilo Dantas Miranda and André Chalom}, +
-    year = {2014}, +
-    note = {R package version 0.2}, +
-    url = {http://piklprado.github.io/sads/}, +
-  } +
- +
-@article{de2015modeling, +
-  title={Modeling Tree Diameter Distributions in Natural Forests: An Evaluation of 10 Statistical Models}, +
-  author={de Lima, Renato Augusto Ferreira and Batista, Jo{\~a}o Lu{\'\i}s Ferreira and Prado, Paulo In{\'a}cio}, +
-  journal={Forest Science}, +
-  volume={61}, +
-  number={2}, +
-  pages={320--327}, +
-  year={2015}, +
-  publisher={Society of American Foresters} +
-} +
- +
- +
-</bibtex>+
  
  
 ==== Patterns of Biological Diversity ==== ==== Patterns of Biological Diversity ====
  
-One of the basic approaches of community ecology is to identify patterns and regularities to infer their underlying structuring processes. I was trained in this tradition of observational research, and I specialized in statistical analysis to detect ecological patterns. I keep researching and advising on this subject, see [[atividades:pesquisa|the page of ongoing projects]].+One of the basic approaches of community ecology is to identify patterns and regularities to infer their underlying structuring processes. I was trained in this tradition of observational research, and I specialized in statistical analysis to detect ecological patterns. I keep researching and advising on this subject.
  
 More recently, I also started some experimental approaches, like manipulative research in the field, and "virtual experiments" with computer simulations. More recently, I also started some experimental approaches, like manipulative research in the field, and "virtual experiments" with computer simulations.
  
-=== Representative Publications === 
- 
-<bibtex> 
-@ARTICLE{almeida2004, 
-  author = {Almeida, A.M. and Prado, P.I. and Lewinsohn, T.M.}, 
-  title = {Geographical distribution of Eupatorieae (Asteraceae) in South-eastern 
- and South Brazilian mountain ranges}, 
-  journal = {Plant ecology}, 
-  year = {2004}, 
-  volume = {174}, 
-  pages = {163--181}, 
-  number = {1}, 
-  publisher = {Springer}, 
-  file ={:prado:almeida2004.pdf} 
-} 
-@ARTICLE{piza2004, 
-  author = {Piza, F.F. and Prado, P.I. and Manfio, G.P.}, 
-  title = {Investigation of bacterial diversity in Brazilian tropical estuarine 
- sediments reveals high actinobacterial diversity}, 
-  journal = {Antonie Van Leeuwenhoek}, 
-  year = {2004}, 
-  volume = {86}, 
-  pages = {317--328}, 
-  number = {4}, 
-  publisher = {Springer}, 
-  file={:prado:piza2004.pdf} 
-} 
-@ARTICLE{lewinsohn2005b, 
-  author = {Lewinsohn, T.M. and Prado, P.I.}, 
-  title = {How many species are there in Brazil?}, 
-  journal = {Conservation Biology}, 
-  year = {2005}, 
-  volume = {19}, 
-  pages = {619--624}, 
-  number = {3}, 
-  publisher = {John Wiley \& Sons}, 
-  file={:prado:lewinsohn2005.pdf} 
-} 
- 
-@ARTICLE{Pardini2010, 
-  author = {Pardini, Renata AND Bueno, Adriana de Arruda AND Gardner, Toby A. 
- AND Prado, Paulo Inácio AND Metzger, Jean Paul}, 
-  title = {Beyond the Fragmentation Threshold Hypothesis: Regime Shifts in Biodiversity 
- Across Fragmented Landscapes}, 
-  journal = {PLoS ONE}, 
-  year = {2010}, 
-  volume = {5}, 
-  pages = {e13666}, 
-  number = {10}, 
-  month = {10}, 
-  doi = {10.1371/journal.pone.0013666}, 
-  publisher = {Public Library of Science}, 
-  url = {http://dx.doi.org/10.1371%2Fjournal.pone.0013666} 
-} 
- 
-@article{martensen2012associations, 
-  title={Associations of forest cover, fragment area, and connectivity with neotropical understory bird species richness and abundance}, 
-  author={Martensen, Alexandre Camargo and Ribeiro, Milton Cezar and Banks-Leite, Cristina and Prado, Paulo Inacio and Metzger, Jean Paul}, 
-  journal={Conservation Biology}, 
-  volume={26}, 
-  number={6}, 
-  pages={1100--1111}, 
-  year={2012}, 
-  publisher={Wiley Online Library} 
-} 
- 
- 
-@article{castanho2015does, 
-  title={Does extreme environmental severity promote plant facilitation? An experimental field test in a subtropical coastal dune.}, 
-  author={Castanho, CT and Oliveira, AA and Prado, PI}, 
-  journal={Oecologia}, 
-  url = {http://link.springer.com/article/10.1007/s00442-015-3285-7}, 
-  year={2015} 
-} 
- 
-</bibtex> 
  
 ==== Structure in Biological Interactions ==== ==== Structure in Biological Interactions ====
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 I work in collaboration with them and other colleagues in the search for patterns in ecological networks, with emphasis on antagonistic systems of herbivorous insects and their host plants. I work in collaboration with them and other colleagues in the search for patterns in ecological networks, with emphasis on antagonistic systems of herbivorous insects and their host plants.
  
-=== Representative Publications === 
  
-<bibtex> +====Modelling of Ecological Dynamics ==== 
-@ARTICLE{prado1999, +I work with many colleagues form Physics, computer science and statistics in models to describe  ecological, evolutionary  and epidemiological dynamics, both in theoretical and empirical settings.
-  author = {Prado, P.I.K.L. and Vieira, E.M.}, +
-  title = {The interplay between plant traits and herbivore attack: a study +
- of a stem galling midge in the neotropics}, +
-  journal = {Ecological entomology}, +
-  year = {1999}, +
-  volume = {24}, +
-  pages = {80--88}, +
-  number = {1}, +
-  publisher = {John Wiley \& Sons}, +
-  file={:prado:prado_vieira1999.pdf} +
-} +
-@ARTICLE{Prado2002, +
-  author = {P.I. Prado and T.M. Lewinsohn and A.M. Almeida and A.L. Norrbom and B.D. Buys and A.C.C. Macedo and M.B. Lopes}, +
-  title = {The Fauna of Tephritidae (Diptera) from Capitula of Asteraceae in Brazil}, +
-  journal = {Proceedings of Washington Entomological Society}, +
-  year = {2002}, +
-  volume = {104}, +
-  pages = {1007-1028}, +
-  number = {4} +
-} +
-@ARTICLE{prado2004, +
-  author = {Prado, P.I. and Lewinsohn, T.M.}, +
-  title = {Compartments in insect-plant associations and their consequences +
- for community structure}, +
-  journal = {Journal of Animal Ecology}, +
-  year = {2004}, +
-  volume = {73}, +
-  pages = {1168--1178}, +
-  number = {6}, +
-  publisher = {John Wiley \& Sons}, +
-  file={:prado:prado2004.pdf} +
-} +
-@ARTICLE{yotoko2005, +
-  author = {Yotoko, K.S.C. and Prado, P.I. and Russo, C.A.M. and Solferini, V.N.}, +
-  title = {Testing the trend towards specialization in herbivore-host plant +
- associations using a molecular phylogeny of Tomoplagia (Diptera: +
- Tephritidae)}, +
-  journal = {Molecular phylogenetics and evolution}, +
-  year = {2005}, +
-  volume = {35}, +
-  pages = {701--711}, +
-  number = {3}, +
-  publisher = {Elsevier}, +
-  file={:prado:yotoko2005.pdf} +
-} +
-@ARTICLE{lewinsohn2006, +
-  author = {Lewinsohn, T.M. and Prado, I. and Jordano, P. and Bascompte, J. and +
- Olesen, M.}, +
-  title = {Structure in plant-animal interaction assemblages}, +
-  journal = {Oikos}, +
-  year = {2006}, +
-  volume = {113}, +
-  pages = {174--184}, +
-  number = {1}, +
-  publisher = {Blackwell Publishing}, +
-  file={:prado:lewinsohn2006.pdf} +
-} +
- +
-@article{pires2011, +
-    author = {Pires, Mathias M. AND Prado, Paulo I. AND Guimarães, Jr, Paulo R.}, +
-    journal = {PLoS ONE}, +
-    publisher = {Public Library of Science}, +
-    title = {Do Food Web Models Reproduce the Structure of Mutualistic Networks?}, +
-    year = {2011}, +
-    month = {11}, +
-    volume = {6}, +
-    url = {http://dx.doi.org/10.1371%2Fjournal.pone.0027280}, +
-    pages = {e27280}, +
-    number = {11}, +
-    doi = {10.1371/journal.pone.0027280} +
-}    +
- +
-@article{jorge2014integrated, +
-  title={An integrated framework to improve the concept of resource specialisation}, +
-  author={Jorge, Leonardo R and Prado, Paulo I and Almeida-Neto, M{\'a}rio and Lewinsohn, Thomas M}, +
-  journal={Ecology letters}, +
-  volume={17}, +
-  number={11}, +
-  pages={1341--1350}, +
-  year={2014}, +
-  publisher={Wiley Online Library} +
-} +
-      +
- +
-</bibtex>+
  
 ==== Applied Ecology ==== ==== Applied Ecology ====
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 Currently these issues are not my main line of investigation, although I keep some ongoing collaborations. Currently these issues are not my main line of investigation, although I keep some ongoing collaborations.
  
-=== Representative Publications === 
  
-<bibtex> +===== Teaching =====
-@BOOK{, +
-  title = {Biodiversidade brasileira: síntese do estado atual do conhecimento}, +
-  publisher = {Editora Contexto}, +
-  year = {2002}, +
-  author = {Lewinsohn, T.M. and Prado, P.I.}, +
-  address = {São Paulo}, +
-  owner = {paulo}, +
-  timestamp = {2010.08.14}, +
-  url={http://www.editoracontexto.com.br/produtos.asp?cod=195} +
-} +
-@ARTICLE{lewinsohn2005, +
-  author = {Lewinsohn, T.M. and Freitas, A.V.L. and Prado, P.I.}, +
-  title = {Conservation of terrestrial invertebrates and their habitats in Brazil}, +
-  journal = {Conservation Biology}, +
-  year = {2005}, +
-  volume = {19}, +
-  pages = {640--645}, +
-  number = {3}, +
-  publisher = {John Wiley \& Sons}, +
-  file={:prado:lewinsohn2005b.pdf} +
-}+
  
-@ARTICLE{becker2007, +In collaboration with many colleagues, I created and teach (or taught) many courses at the [[http://ecologia.ib.usp.br/pos|Graduate Studies Program in Ecology]] at USP
-  author = {Becker, C.G. and Fonseca, C.R. and Haddad, C.F.B. and Batista, R.F. +
- and Prado, P.I.}, +
-  title = {Habitat split and the global decline of amphibians}, +
-  journal = {Science}, +
-  year = {2007}, +
-  volume = {318}, +
-  pages = {1775}, +
-  number = {5857}, +
-  publisher = {AAAS}, +
-  file={:prado:becker2007.pdf} +
-} +
-@ARTICLE{ribeiro2008, +
-  author = {Ribeiro, D.B. and Prado, P.I. and Brown Jr, K.S. and Freitas, A.V.L.}, +
-  title = {Additive partitioning of butterfly diversity in a fragmented landscape: +
- importance of scale and implications for conservation}, +
-  journal = {Diversity and Distributions}, +
-  year = {2008}, +
-  volume = {14}, +
-  pages = {961--968}, +
-  number = {6}, +
-  publisher = {John Wiley \& Sons}, +
-  file={:prado:ribeiro2008.pdf} +
-}+
  
-@article{laporta2013biodiversity, +  * [[cmq.esalq.usp.br/BIE5781/doku.php?id=start|Statistic Models in Ecology and Resource Management]]
-  title={Biodiversity Can Help Prevent Malaria Outbreaks in Tropical Forests}, +
-  author={Laporta, Gabriel Zorello and Prado, Knegt Lopezde and Kraenkel, Roberto Andr{\'e} and Coutinho, Renato Mendes and Sallum, Maria AniceMureb}, +
-  journal={PLoS Neglected Tropical Diseases}, +
-  volume={7}, +
-  number={3}, +
-  year={2013}, +
-  publisher={Public Library of Science} +
-}+
  
 +  * [[http://ecor.ib.usp.br|Introduction to the R language for ecologists]]
  
-</bibtex>+  * [[http://ecologia.ib.usp.br/bie5778/|Community Ecology]]
  
 +  * [[http://ecologia.ib.usp.br/bie5703/|Statistical Methods in population Ecology]]
  
 +Also at USP, I  coordinated our [[http://ecologia.ib.usp.br/curso|Field Course]] for graduate students, and the undergraduate course of Population and community ecology of plants, and [[http://ecovirtual.ib.usp.br|Virtual Ecology]].
  
- +I am also co-coordinator of the [[http://ecologia.ib.usp.br/ssmb/|Southern Schools on Mathematical Biology]] at ICTP/SAIFR
- +
-===== Teaching ===== +
- +
-In collaboration with many colleagues, I created and teach the courses at the [[http://ecologia.ib.usp.br/pos|Graduate Studies Program in Ecology]] at USP +
- +
-  * [[http://cmq.esalq.usp.br/wiki/doku.php?id=biometria:verossim:start|Statistic Models in Ecology and Resource Management]] +
- +
-  * [[http://ecologia.ib.usp.br/bie5782|Introduction to the R language for ecologists]] +
- +
-  * [[http://ecologia.ib.usp.br/bie5778/|Community Ecology]] +
- +
-Also at USP, I'm one of the teachers who coordinate our [[http://ecologia.ib.usp.br/curso|Field Course]] for graduate students, and the undergraduate course of [[http://ecologia.ib.usp.br/bie320|Population and community ecology of plants]].+
  
 A comprehensive list courses I teach is in the page of [[atividades:ensino|teaching acitivities]].  A comprehensive list courses I teach is in the page of [[atividades:ensino|teaching acitivities]]. 
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 Graduate work already completed. For work in progress, please see the pages of  [[:equipe|current students]]. Graduate work already completed. For work in progress, please see the pages of  [[:equipe|current students]].
 +
 +===At Universidade Estadual de Campinas===
  
 <bibtex> <bibtex>
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   url = {http://libdigi.unicamp.br/document/?code=vtls000438318}   url = {http://libdigi.unicamp.br/document/?code=vtls000438318}
 } }
-@MASTERSTHESIS{, + 
-  author = {Mello, T. F.}, +
-  title = {Estrutura da vegetação, cobertura florestal e preferências de uso +
- da paisagem associadas a vertentes: as quase-florestas de São Luiz +
- do Paraitinga}, +
-  year = {2010}, +
-  school={Universidade de São Paulo}, +
-  address = {USP, São Paulo}, +
-  owner = {paulo}, +
-  timestamp = {2010.08.15}, +
-  url = {http://www.teses.usp.br/teses/disponiveis/41/41134/tde-19042010-105930/} +
-}+
 @PHDTHESIS{Paise2010, @PHDTHESIS{Paise2010,
   author = {Paise, G.},   author = {Paise, G.},
Linha 412: Linha 120:
 } }
  
-@MASTERSTHESIS{mandai2010, 
-  author = {Mandai, C. Y.}, 
-  title = {Aplicação de modelos teóricos de distribuição de abundância das espécies na avaliação de efeitos de fragmentação sobre as comunidades de aves da Mata Atlântica}, 
-  year = {2010}, 
-  school={Universidade de São Paulo}, 
-  address = {USP, São Paulo}, 
-  owner = {paulo}, 
-  timestamp = {2010.08.15}, 
-  url={http://www.teses.usp.br/teses/disponiveis/41/41134/tde-15122010-164250/pt-br.php} 
-} 
  
-@MASTERSTHESIS{rodrigues2011, +</bibtex>
-  author = {Rodrigues, R. C.}, +
-  title = {Uso de modelos de distribuição de abundância na análise da relação entre diversidade de aves e variáveis ambientais e antrópicas}, +
-  year = {2011}, +
-  school={Universidade de São Paulo}, +
-  address = {USP, São Paulo}, +
- url={http://www.teses.usp.br/teses/disponiveis/41/41134/tde-20012012-160435/pt-br.php} +
-}+
  
-@PHDTHESIS{Laporta2012, +===At Universidade de São Paulo===
-  author = {Laporta, G. Z.}, +
-  title = {Biodiversidade de Culicidae e sua interação com arboviroses e malária na Mata Atlântica}, +
-  school = {Faculdade de Saúde Pública, Universidade de São Paulo (Co-advisor)}, +
-  year = {2012}, +
-  address = {USP, São Paulo}, +
-  url={http://www.teses.usp.br/teses/disponiveis/6/6132/tde-07052012-094752/pt-br.php} +
-}+
  
-@PHDTHESIS{Lima2013, +Please check at [[https://www.teses.usp.br/index.php?option=com_jumi&fileid=14&Itemid=161&lang=en&id=C7A3EBAC9BFC|USP Repository]]
-  author = {Lima, R. A. F.}, +
-  title = {Ajuste e seleção de modelos na descrição de comunidades arbóreas : estrutura, diversidade e padrões espaciais}, +
-  school = {Universidade de São Paulo}, +
-  year = {2013}, +
-  address = {USP, São Paulo}, +
-  url={http://www.teses.usp.br/teses/disponiveis/41/41134/tde-22102013-150112/en.php} +
-}+
  
  
-</bibtex> 
  
 +===== Contact Info =====
  
  
- 
-===== List of all Publications ===== 
- 
-Soon in this site. Meanwhile you can check my extended CV in the [[http://lattes.cnpq.br/3884092565521453|Lattes Database]] kept by the Brazilian Research Council ( [[http://www.cnpq.br|CNPq]] ), [[http://www.mendeley.com/profiles/paulo-prado/|my profile at Mendeley]] or at [[http://scholar.google.com/citations?user=Q8PN0rAAAAAJ&hl=en|Google Scholar]]. 
- 
-===== Contact Info ===== 
 <box round right 45%> <box round right 45%>
  
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