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--- 2017:courses:debarre:start [2017/01/20 10:16] – debarre
+++ 2017:courses:debarre:start [2024/01/09 18:45] (current) – external edit 127.0.0.1
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 ===== Topics =====
+Each lecture ends with a list of key references. Below are listed additional references related to the questions asked.
 ==== Lecture 1: Introduction of Methods and Concepts ====
- [[http://ecologia.ib.usp.br/ssmb/lib/exe/fetch.php?media=2017:courses:debarre:lecture1.pdf|Slides]]
+ [[http://ecologia.ib.usp.br/ssmb/lib/exe/fetch.php?media=2017:courses:debarre:lecture1.pdf|Slides]] (updated)
+=== References related to the questions asked after the lecture ===
+- On Adaptive dynamics when multiple traits evolve jointly:\\
+[[http://www.zoologi.su.se/research/leimar/fulltext/Leimar2009b.pdf|Leimar 2009 EER]]\\
+[[http://www.journals.uchicago.edu/doi/full/10.1086/677137|Débarre et al. 2014, The American Naturalist]]
+- Adaptive dynamics: limitations of the framework\\
+[[http://onlinelibrary.wiley.com/doi/10.1111/j.1420-9101.2005.00948.x/pdf|Waxman and Gavrilets 2005, JEB]] -- followed by a series of replies, the whole issue was devoted to the topic!
+- On the competition model presented as example:\\
+Roughgarden, J. 1979. Theory of Population Genetics and Evolutionary Ecology: An Introduction. Macmillan Publishing Company, New York. (It is a book, so no link)\\
+[[http://www.zoology.ubc.ca/~otto/PopGen500/Articles/DoebeliDieckmann2000.pdf|Doebeli and Dieckmann 2000, The American Naturalist]], the Adaptive Dynamics version of the model.\\
+[[https://www.researchgate.net/profile/Jitka_Polechova/publication/7695813_Speciation_through_competition_A_critical_review/links/55bf1ccc08aed621de121b67.pdf|Polechova and Barton 2005, Evolution]], a critique showing in particular that multiple branching events occur and that there is a unimodal final distribution of trait values.\\
+[[http://rspb.royalsocietypublishing.org/content/274/1608/347.short| Doebeli et al. 2007, Procs B]], showing that Gaussian functions lead to non-genetic results, but that other functions lead to multimodal distributions of traits.\\
+[[http://onlinelibrary.wiley.com/doi/10.1111/j.1420-9101.2012.02621.x/full|Débarre 2012 JEB]], for a version of the model with a bimodal distributions of resources.
+- On selection on $r$ vs. $K$ (with a mechanistic derivation of the logistic equation)\\
+[[http://www.journals.uchicago.edu/doi/full/10.1086/508618| Rueffler et al. 2006, The American Naturalist]]
+- On fixation probabilities vs. invasion fitness\\
+[[http://www.mast.queensu.ca/~tday/pdf/ProulxDay01.PDF| Proulx and Day 2001, Selection]]
 ==== Lecture 2: The evolution of dispersal ====
  [[http://ecologia.ib.usp.br/ssmb/lib/exe/fetch.php?media=2017:courses:debarre:lecture2.pdf|Slides]]
+=== References related to the questions asked after the lecture ===
+- Evolution of dispersal in nature\\
+[[http://www.pnas.org/content/105/10/3796.long| Cheptou et al. 2008, PNAS]]
+- When heterogeneity is both temporal and spatial\\
+[[http://gepv.univ-lille1.fr/downloads/downloads_labo/Massol,%20Debarre%20-%20Evolution%20-%202015.pdf| Massol and Débarre 2015, Evolution]]
 ==== Lecture 3: Evolution in heterogeneous environments ====
  [[http://ecologia.ib.usp.br/ssmb/lib/exe/fetch.php?media=2017:courses:debarre:lecture3.pdf|Slides]]
+=== References related to the questions asked after the lecture ===
+- Evolution after branching -- isoclines\\
+[[http://pure.iiasa.ac.at/5610/1/IR-98-038.pdf|Kisdi and Geritz 1999, Evolution]], see for instance Figure 2.
+- Experimental test of hard and soft selection\\
+[[http://biorxiv.org/content/early/2017/01/16/100743| Gallet et al. 2017, bioRxiv]]
+- The different types of weak selection: small phenotypic differences vs. small contributions from the game.\\
+[[http://www.sciencedirect.com/science/article/pii/S0022519307001336|Wild and Traulsen 2007 JTB (paywall)]]
+==== Round table ====
+[[http://earthweb.ess.washington.edu/roe/Knowability_590/Week3/Levins_1966.pdf|Levins 1966, American Scientist]]
 ==== Lecture 4: Social evolution in structured populations ====
 This lecture will be done on the black/white board.
- [[http://ecologia.ib.usp.br/ssmb/lib/exe/fetch.php?media=2017:courses:debarre:l4_handout.pdf|Handout]]
+ [[http://ecologia.ib.usp.br/ssmb/lib/exe/fetch.php?media=2017:courses:debarre:l4_handout.pdf|Handout]] (updated on 2017-01-26)