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====== Paulo Inácio Prado ====== | ====== Paulo Inácio Prado ====== | ||
- | {{:prado:paulo_2010.jpg?200 }} | + | {{:prado:gpi.jpg }} |
I am a biologist, PhD in Ecology and teacher at the [[http:// | I am a biologist, PhD in Ecology and teacher at the [[http:// | ||
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\\ | \\ | ||
- | ===== Research | + | * CV in the [[http:// |
- | ====Imperfect detection - Does it matter? ==== | + | |
- | === Goal === | ||
- | To | ||
- | evaluate the sensitivity of the results and conclusions of selected case studies to the | ||
- | inclusion of imperfect detection. | ||
- | === Background | + | ===== Research |
- | The advancement and application of ecological theory depends on | + | |
- | unbiased and precise estimates of occurrence, size and vital rates of | + | |
- | populations in ecological systems. There is a growing concern that | + | |
- | such estimates are strongly affected by observation bias; the most | + | |
- | obvious case are false absences. A | + | |
- | formalism of hierarchical statistical models to tackle the problem is | + | |
- | now available. Colletively known as hierarchical models with imperfect | + | |
- | detection, such statistical methods could be applied much more widely | + | |
- | than they currently are. Nevertheless, | + | |
- | complex statistical procedures and larger sampling efforts. Thus, it | + | |
- | is necessary to evaluate the effective gains of the models with | + | |
- | imperfect detection in different types of ecological research. | + | |
- | + | ||
- | + | ||
- | ==== Species Abundance Distributions ==== | + | |
- | + | ||
- | Because I seek first principles, one of my research interests is perhaps the only general law in Community Ecology: the predominance of rare species. | + | |
- | + | ||
- | My main research project is to develop an analytical protocol to describe this pattern. The research was funded by [[www.fapesp.br|FAPESP]] and [[www.cnpq.br|CNPq]], | + | |
- | + | ||
- | Many of my students also do their research on this topic, see the page of [[atividades: | + | |
- | + | ||
- | === Representative Publications === | + | |
- | + | ||
- | < | + | |
- | @ARTICLE{Prado2009, | + | |
- | author = {Prado, P I}, | + | |
- | title = {Distribuições de Abundâncias de Espécies: avanços analíticos para entender um padrão básico em ecologia}, | + | |
- | journal = {Ciência e Ambiente}, | + | |
- | year = {2009}, | + | |
- | volume = {39}, | + | |
- | pages = {121 -- 136}, | + | |
- | file={: | + | |
- | } | + | |
- | + | ||
- | @Manual{, | + | |
- | title = {{sads}: Maximum Likelihood Models for Species Abundance Distributions}, | + | |
- | author = {Paulo I. Prado and Murilo Dantas Miranda and André Chalom}, | + | |
- | year = {2014}, | + | |
- | note = {R package version 0.2}, | + | |
- | url = {http:// | + | |
- | } | + | |
- | + | ||
- | @article{de2015modeling, | + | |
- | title={Modeling Tree Diameter Distributions in Natural Forests: An Evaluation of 10 Statistical Models}, | + | |
- | author={de Lima, Renato Augusto Ferreira and Batista, Jo{\~a}o Lu{\' | + | |
- | journal={Forest Science}, | + | |
- | volume={61}, | + | |
- | number={2}, | + | |
- | pages={320--327}, | + | |
- | year={2015}, | + | |
- | publisher={Society of American Foresters} | + | |
- | } | + | |
- | + | ||
- | + | ||
- | </ | + | |
==== Patterns of Biological Diversity ==== | ==== Patterns of Biological Diversity ==== | ||
- | One of the basic approaches of community ecology is to identify patterns and regularities to infer their underlying structuring processes. I was trained in this tradition of observational research, and I specialized in statistical analysis to detect ecological patterns. I keep researching and advising on this subject, see [[atividades: | + | One of the basic approaches of community ecology is to identify patterns and regularities to infer their underlying structuring processes. I was trained in this tradition of observational research, and I specialized in statistical analysis to detect ecological patterns. I keep researching and advising on this subject. |
More recently, I also started some experimental approaches, like manipulative research in the field, and " | More recently, I also started some experimental approaches, like manipulative research in the field, and " | ||
- | === Representative Publications === | ||
- | |||
- | < | ||
- | @ARTICLE{almeida2004, | ||
- | author = {Almeida, A.M. and Prado, P.I. and Lewinsohn, T.M.}, | ||
- | title = {Geographical distribution of Eupatorieae (Asteraceae) in South-eastern | ||
- | and South Brazilian mountain ranges}, | ||
- | journal = {Plant ecology}, | ||
- | year = {2004}, | ||
- | volume = {174}, | ||
- | pages = {163--181}, | ||
- | number = {1}, | ||
- | publisher = {Springer}, | ||
- | file ={: | ||
- | } | ||
- | @ARTICLE{piza2004, | ||
- | author = {Piza, F.F. and Prado, P.I. and Manfio, G.P.}, | ||
- | title = {Investigation of bacterial diversity in Brazilian tropical estuarine | ||
- | sediments reveals high actinobacterial diversity}, | ||
- | journal = {Antonie Van Leeuwenhoek}, | ||
- | year = {2004}, | ||
- | volume = {86}, | ||
- | pages = {317--328}, | ||
- | number = {4}, | ||
- | publisher = {Springer}, | ||
- | file={: | ||
- | } | ||
- | @ARTICLE{lewinsohn2005b, | ||
- | author = {Lewinsohn, T.M. and Prado, P.I.}, | ||
- | title = {How many species are there in Brazil?}, | ||
- | journal = {Conservation Biology}, | ||
- | year = {2005}, | ||
- | volume = {19}, | ||
- | pages = {619--624}, | ||
- | number = {3}, | ||
- | publisher = {John Wiley \& Sons}, | ||
- | file={: | ||
- | } | ||
- | |||
- | @ARTICLE{Pardini2010, | ||
- | author = {Pardini, Renata AND Bueno, Adriana de Arruda AND Gardner, Toby A. | ||
- | AND Prado, Paulo Inácio AND Metzger, Jean Paul}, | ||
- | title = {Beyond the Fragmentation Threshold Hypothesis: Regime Shifts in Biodiversity | ||
- | Across Fragmented Landscapes}, | ||
- | journal = {PLoS ONE}, | ||
- | year = {2010}, | ||
- | volume = {5}, | ||
- | pages = {e13666}, | ||
- | number = {10}, | ||
- | month = {10}, | ||
- | doi = {10.1371/ | ||
- | publisher = {Public Library of Science}, | ||
- | url = {http:// | ||
- | } | ||
- | |||
- | @article{martensen2012associations, | ||
- | title={Associations of forest cover, fragment area, and connectivity with neotropical understory bird species richness and abundance}, | ||
- | author={Martensen, | ||
- | journal={Conservation Biology}, | ||
- | volume={26}, | ||
- | number={6}, | ||
- | pages={1100--1111}, | ||
- | year={2012}, | ||
- | publisher={Wiley Online Library} | ||
- | } | ||
- | |||
- | |||
- | @article{castanho2015does, | ||
- | title={Does extreme environmental severity promote plant facilitation? | ||
- | author={Castanho, | ||
- | journal={Oecologia}, | ||
- | url = {http:// | ||
- | year={2015} | ||
- | } | ||
- | |||
- | </ | ||
==== Structure in Biological Interactions ==== | ==== Structure in Biological Interactions ==== | ||
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I work in collaboration with them and other colleagues in the search for patterns in ecological networks, with emphasis on antagonistic systems of herbivorous insects and their host plants. | I work in collaboration with them and other colleagues in the search for patterns in ecological networks, with emphasis on antagonistic systems of herbivorous insects and their host plants. | ||
- | === Representative Publications === | ||
- | < | + | ====Modelling |
- | @ARTICLE{prado1999, | + | I work with many colleagues form Physics, computer science |
- | author | + | |
- | title = {The interplay between plant traits and herbivore attack: a study | + | |
- | of a stem galling midge in the neotropics}, | + | |
- | journal = {Ecological | + | |
- | year = {1999}, | + | |
- | volume | + | |
- | pages = {80--88}, | + | |
- | number | + | |
- | | + | |
- | file={: | + | |
- | } | + | |
- | @ARTICLE{Prado2002, | + | |
- | author = {P.I. Prado and T.M. Lewinsohn and A.M. Almeida and A.L. Norrbom and B.D. Buys and A.C.C. Macedo and M.B. Lopes}, | + | |
- | title = {The Fauna of Tephritidae (Diptera) from Capitula of Asteraceae in Brazil}, | + | |
- | journal = {Proceedings of Washington Entomological Society}, | + | |
- | year = {2002}, | + | |
- | volume = {104}, | + | |
- | pages = {1007-1028}, | + | |
- | number = {4} | + | |
- | } | + | |
- | @ARTICLE{prado2004, | + | |
- | author = {Prado, P.I. and Lewinsohn, T.M.}, | + | |
- | title = {Compartments | + | |
- | for community structure}, | + | |
- | journal = {Journal of Animal Ecology}, | + | |
- | year = {2004}, | + | |
- | volume = {73}, | + | |
- | pages = {1168--1178}, | + | |
- | number = {6}, | + | |
- | publisher = {John Wiley \& Sons}, | + | |
- | file={: | + | |
- | } | + | |
- | @ARTICLE{yotoko2005, | + | |
- | author = {Yotoko, K.S.C. | + | |
- | title = {Testing the trend towards specialization | + | |
- | associations using a molecular phylogeny of Tomoplagia (Diptera: | + | |
- | Tephritidae)}, | + | |
- | journal = {Molecular phylogenetics | + | |
- | year = {2005}, | + | |
- | volume = {35}, | + | |
- | pages = {701--711}, | + | |
- | number = {3}, | + | |
- | publisher = {Elsevier}, | + | |
- | file={: | + | |
- | } | + | |
- | @ARTICLE{lewinsohn2006, | + | |
- | author = {Lewinsohn, T.M. and Prado, I. and Jordano, P. and Bascompte, J. and | + | |
- | Olesen, M.}, | + | |
- | title = {Structure in plant-animal interaction assemblages}, | + | |
- | journal = {Oikos}, | + | |
- | year = {2006}, | + | |
- | volume = {113}, | + | |
- | pages = {174--184}, | + | |
- | number = {1}, | + | |
- | publisher = {Blackwell Publishing}, | + | |
- | file={: | + | |
- | } | + | |
- | + | ||
- | @article{pires2011, | + | |
- | author = {Pires, Mathias M. AND Prado, Paulo I. AND Guimarães, Jr, Paulo R.}, | + | |
- | journal = {PLoS ONE}, | + | |
- | publisher = {Public Library of Science}, | + | |
- | title = {Do Food Web Models Reproduce the Structure of Mutualistic Networks? | + | |
- | year = {2011}, | + | |
- | month = {11}, | + | |
- | volume = {6}, | + | |
- | url = {http:// | + | |
- | pages = {e27280}, | + | |
- | number = {11}, | + | |
- | doi = {10.1371/ | + | |
- | } | + | |
- | + | ||
- | @article{jorge2014integrated, | + | |
- | title={An integrated framework to improve the concept of resource specialisation}, | + | |
- | author={Jorge, | + | |
- | journal={Ecology letters}, | + | |
- | volume={17}, | + | |
- | number={11}, | + | |
- | pages={1341--1350}, | + | |
- | year={2014}, | + | |
- | publisher={Wiley Online Library} | + | |
- | } | + | |
- | + | ||
- | + | ||
- | </ | + | |
==== Applied Ecology ==== | ==== Applied Ecology ==== | ||
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Currently these issues are not my main line of investigation, | Currently these issues are not my main line of investigation, | ||
- | |||
- | === Representative Publications === | ||
- | |||
- | < | ||
- | @BOOK{, | ||
- | title = {Biodiversidade brasileira: síntese do estado atual do conhecimento}, | ||
- | publisher = {Editora Contexto}, | ||
- | year = {2002}, | ||
- | author = {Lewinsohn, T.M. and Prado, P.I.}, | ||
- | address = {São Paulo}, | ||
- | owner = {paulo}, | ||
- | timestamp = {2010.08.14}, | ||
- | url={http:// | ||
- | } | ||
- | @ARTICLE{lewinsohn2005, | ||
- | author = {Lewinsohn, T.M. and Freitas, A.V.L. and Prado, P.I.}, | ||
- | title = {Conservation of terrestrial invertebrates and their habitats in Brazil}, | ||
- | journal = {Conservation Biology}, | ||
- | year = {2005}, | ||
- | volume = {19}, | ||
- | pages = {640--645}, | ||
- | number = {3}, | ||
- | publisher = {John Wiley \& Sons}, | ||
- | file={: | ||
- | } | ||
- | |||
- | @ARTICLE{becker2007, | ||
- | author = {Becker, C.G. and Fonseca, C.R. and Haddad, C.F.B. and Batista, R.F. | ||
- | and Prado, P.I.}, | ||
- | title = {Habitat split and the global decline of amphibians}, | ||
- | journal = {Science}, | ||
- | year = {2007}, | ||
- | volume = {318}, | ||
- | pages = {1775}, | ||
- | number = {5857}, | ||
- | publisher = {AAAS}, | ||
- | file={: | ||
- | } | ||
- | @ARTICLE{ribeiro2008, | ||
- | author = {Ribeiro, D.B. and Prado, P.I. and Brown Jr, K.S. and Freitas, A.V.L.}, | ||
- | title = {Additive partitioning of butterfly diversity in a fragmented landscape: | ||
- | importance of scale and implications for conservation}, | ||
- | journal = {Diversity and Distributions}, | ||
- | year = {2008}, | ||
- | volume = {14}, | ||
- | pages = {961--968}, | ||
- | number = {6}, | ||
- | publisher = {John Wiley \& Sons}, | ||
- | file={: | ||
- | } | ||
- | |||
- | @article{laporta2013biodiversity, | ||
- | title={Biodiversity Can Help Prevent Malaria Outbreaks in Tropical Forests}, | ||
- | author={Laporta, | ||
- | journal={PLoS Neglected Tropical Diseases}, | ||
- | volume={7}, | ||
- | number={3}, | ||
- | year={2013}, | ||
- | publisher={Public Library of Science} | ||
- | } | ||
- | |||
- | |||
- | </ | ||
- | |||
- | |||
- | |||
===== Teaching ===== | ===== Teaching ===== | ||
- | In collaboration with many colleagues, I created and teach the courses at the [[http:// | + | In collaboration with many colleagues, I created and teach (or taught) many courses at the [[http:// |
- | * [[http://cmq.esalq.usp.br/ | + | * [[cmq.esalq.usp.br/ |
- | * [[http://ecologia.ib.usp.br/bie5782|Introduction to the R language for ecologists]] | + | * [[http://ecor.ib.usp.br|Introduction to the R language for ecologists]] |
* [[http:// | * [[http:// | ||
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* [[http:// | * [[http:// | ||
- | Also at USP, I'm one of the teachers who coordinate | + | Also at USP, I |
+ | |||
+ | I am also co-coordinator of the [[http:// | ||
A comprehensive list courses I teach is in the page of [[atividades: | A comprehensive list courses I teach is in the page of [[atividades: | ||
Linha 354: | Linha 68: | ||
Graduate work already completed. For work in progress, please see the pages of [[: | Graduate work already completed. For work in progress, please see the pages of [[: | ||
+ | |||
+ | ===At Universidade Estadual de Campinas=== | ||
< | < | ||
Linha 390: | Linha 106: | ||
url = {http:// | url = {http:// | ||
} | } | ||
- | @MASTERSTHESIS{, | + | |
- | | + | |
- | title = {Estrutura da vegetação, | + | |
- | da paisagem associadas a vertentes: as quase-florestas de São Luiz | + | |
- | do Paraitinga}, | + | |
- | year = {2010}, | + | |
- | school={Universidade de São Paulo}, | + | |
- | address = {USP, São Paulo}, | + | |
- | owner = {paulo}, | + | |
- | timestamp = {2010.08.15}, | + | |
- | url = {http:// | + | |
- | } | + | |
@PHDTHESIS{Paise2010, | @PHDTHESIS{Paise2010, | ||
author = {Paise, G.}, | author = {Paise, G.}, | ||
Linha 414: | Linha 120: | ||
} | } | ||
- | @MASTERSTHESIS{mandai2010, | ||
- | author = {Mandai, C. Y.}, | ||
- | title = {Aplicação de modelos teóricos de distribuição de abundância das espécies na avaliação de efeitos de fragmentação sobre as comunidades de aves da Mata Atlântica}, | ||
- | year = {2010}, | ||
- | school={Universidade de São Paulo}, | ||
- | address = {USP, São Paulo}, | ||
- | owner = {paulo}, | ||
- | timestamp = {2010.08.15}, | ||
- | url={http:// | ||
- | } | ||
- | @MASTERSTHESIS{rodrigues2011, | + | </bibtex> |
- | author = {Rodrigues, R. C.}, | + | |
- | title = {Uso de modelos de distribuição de abundância na análise da relação entre diversidade de aves e variáveis ambientais e antrópicas}, | + | |
- | year = {2011}, | + | |
- | school={Universidade de São Paulo}, | + | |
- | address = {USP, São Paulo}, | + | |
- | | + | |
- | } | + | |
- | @PHDTHESIS{Laporta2012, | + | ===At Universidade de São Paulo=== |
- | author | + | |
- | title = {Biodiversidade de Culicidae e sua interação com arboviroses e malária na Mata Atlântica}, | + | |
- | school | + | |
- | year = {2012}, | + | |
- | address | + | |
- | url={http:// | + | |
- | } | + | |
- | @PHDTHESIS{Lima2013, | + | Please check at [[https:// |
- | author = {Lima, R. A. F.}, | + | |
- | title = {Ajuste e seleção de modelos na descrição de comunidades arbóreas : estrutura, diversidade e padrões espaciais}, | + | |
- | school = {Universidade de São Paulo}, | + | |
- | year = {2013}, | + | |
- | address = {USP, São Paulo}, | + | |
- | url={http:// | + | |
- | } | + | |
- | </ | ||
+ | ===== Contact Info ===== | ||
- | |||
- | ===== List of all Publications ===== | ||
- | |||
- | Soon in this site. Meanwhile you can check my extended CV in the [[http:// | ||
- | |||
- | ===== Contact Info ===== | ||
<box round right 45%> | <box round right 45%> | ||
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